Artem N.

молекулярный биолог, менеджер проектов, биоинформатик

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Последнее обновление резюме 13.06.2021
Адрес Bodø, Norway
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Опыт

Nord University
PostDoc
Ноя 2018 - Текущий
Kurchatov Institute
Head Of Laboratory
Июн 2015 - Ноя 2018
Kurchatov Institute
Deputy Head Of Laboratory
Мар 2015 - Июн 2015
Kurchatov Institute
PostDoc
Май 2009 - Мар 2015
Russian Academy of Sciences, Centre for Bioengineering RAS
PhD Student
Июл 2005 - Дек 2008

В чем вы сильны?

PCR, Next-generation sequencing, RNA-seq, microRNA-seq, ancient DNA, statistics, population genetics, genomics, bioinformatics (RNA-seq analysis, genome de novo assembly), sampling, aquaculture

Расскажите о себе что-нибудь еще: публикации, конференции, хобби

  1. Nedoluzhko A.V., Gladysheva-Azgari M.V., Shalgimbayeva G.M., Volkov A.A., Slobodova N.V., Tsygankova S.V., Boulygina E.S., Nguyen V.Q., Pham T.T., Nguyen D.T., Sharko F.S., Rastorguev S.M.: Genetic contribution of domestic European common carp (Cyprinus carpio carpio) and Amur carp (Cyprinus carpio haematopterus) to the wild Vietnamese carp population as revealed by ddRAD sequencing // Aquaculture. 2021. 737049. doi:10.1016/j.aquaculture.2021.737049.
  2. Spasskaya N.N., Pavlinov I.Ya., Sharko F.S., Boulygina E.S., Tsygankova S.V., Nedoluzhko A.V., Boeskorov G.G., Mashchenko E.N.: Morphometric and genetic analyses of diversity
    of the Lena horse (Equus lenensis Russanov, 1968; Mammalia: Equidae) // Russian J. Theriol. 2021. V. 20(1). P.82–95. doi:10.15298/rusjtheriol.20.1.09
  3. Sharko, F.S., Boulygina, E.S., Tsygankova, S.V., Slobodova N.V., Alekseev D.A., Krasivskaya A.A., Rastorguev S.M., Tikhonov A.N., Nedoluzhko A.V.: Steller’s sea cow genome suggests this species began going extinct before the arrival of Paleolithic humans // Nature Communications. 2021. 12. 2215. https://doi.org/10.1038/s41467-021-22567-5
  4. Nedoluzhko A., Sharko F., Tsygankova S., Boulygina E., Ibragimova A., Teslyuk A., Galindo-Villegas J., Rastorguev S.: Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin // Heliyon. 2021. V. 7(2). e06160. doi: 10.1016/j.heliyon.2021.e06160.
  5. Nedoluzhko A., Gruzdeva N., Sharko F., Rastorguev S., Zakharova N., Kostyuk G., Ushakov V.: The Biomarker and Therapeutic Potential of Circular Rnas in Schizophrenia. Cells. 2020. 9. 2238.
  6. Artem V. Nedoluzhko, Natalia V. Slobodova, Fedor Sharko, Gulmira M. Shalgimbayeva, Svetlana V. Tsygankova, Eugenia S. Boulygina, Zsigmond Jeney, Van Q. Nguyen, Thế T. Pham, Đức T. Nguyen, Alexander A. Volkov, Jorge M.O. Fernandes, Sergey M. Rastorguev: A new strain group of common carp: The genetic differences and admixture events between Cyprinus carpio breeds // Ecology and Evolution. 2020. doi: 10.1002/ece3.6286.
  7. Eugenia Boulygina, Svetlana Tsygankova, Fedor Sharko, Natalia Slobodova, Natalia Gruzdeva, Sergey Rastorguev, Andrej Belinsky, Heinrich Härke, Anna Kadieva, Sergej Demidenko, Tatiana Shvedchikova, Maria Dobrovolskaya, Irina Reshetova, Dmitry Korobov, Artem NedoluzhkoMitochondrial and Y-chromosome diversity of the prehistoric Koban culture of the North Caucasus // Journal of Archaeological Science: Reports. 2020. Volume 31. 102357. doi: 10.1016/j.jasrep.2020.102357.
  8. Boris Velichkovsky, Artem Nedoluzhko, Elkhonon Goldberg, Olga Efimova, Fedor Sharko, Sergey Rastorguev, Anna Krasivskaya, Maxim Sharaev, Anastasia Korosteleva, Vadim Ushakov: New Insights into the Human Brain’s Cognitive Organization: Views from the Top, from the Bottom, from the Left and, particularly, from the Right // Procedia Computer Science. 2020. V. 169. P. 547-557. doi: 10.1016/j.procs.2020.02.211.
  9. Ioannis Konstantinidis, Pål Sætrom, Robin Mjelle, Artem V. Nedoluzhko, Diego Robledo & Jorge M. O. Fernandes: Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication // Epigenetics. 2020. doi: 10.1080/15592294.2020.1748914
  10. Nedoluzhko A., Sharko F., Rbbani M.G., Teslyuk A., Konstantinidis I., Fernandes J.M.O.: CircParser: a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms // PeerJ. 2020. V. 8. e8757. doi: 10.7717/peerj.8757
  11. Nedoluzhko A.V., Sharko F.S., Tsygankova S.V., Boulygina E.S., Barmintseva A.E., Krasivskaya A.A., Ibragimova A.S., Gruzdeva N.M., Rastorguev S.M., Mugue N.S.: Molecular phylogeny of one extinct and two critically endangered Central Asian sturgeon species (genus Pseudoscaphirhynchus) based on their mitochondrial genomes // Scientific Reports. 2020. 10(1):722. doi: 10.1038/s41598-020-57581-y.
  12. Artem V. Nedoluzhko, Fedor S. Sharko, Eugenia S. Boulygina, Svetlana V. Tsygankova, Natalia V. Slobodova, Natalia M. Gruzdeva, Sergey M. Rastorguev, Natalia N. Spasskaya & Evgeny N. Maschenko: The complete mitochondrial genome of the extinct Pleistocene horse (Equus cf. lenensis) from Kotelny Island (New Siberian Islands, Russia) and its phylogenetic assessment // Mitochondrial DNA Part B. 2020. V. 5 (1). P. 243 - 245. 
  13. Sharko F.S., Nedoluzhko A.V., Lê B.M., Tsygankova S.V., Boulygina E.S., Rastorguev S.M., Sokolov A.S., Rodriguez F., Mazur A.M., Polilov A.A., Benton R., Evgen'ev M.B., Arkhipova I.R., Prokhortchouk E.B., Skryabin K.G.: A partial genome assembly of the miniature parasitoid wasp, Megaphragma amalphitanum // PLoS ONE. 2019. V. 14(12):e0226485. doi: 10.1371/journal.pone.0226485
  14. Sharko F.S., Boulygina E.S., Rastorguev S.M., Tsygankova S.V., Tomkovich P.S., Nedoluzhko A.V.: Phylogenetic position of the presumably extinct slender-billed curlew, Numenius tenuirostris // Mitochondrial DNA Part A. 2019. DOI: 10.1080/24701394.2019.1597862
  15. Sharko F.S., Rastorguev S.M., Boulygina E.S., Tsygankova S.V., Ibragimova A.S., Tikhonov A.N., Nedoluzhko A.V.Molecular phylogeny of the extinct Steller's sea cow and other Sirenia species based on their complete mitochondrial genomes // Genomics. 2018. pii: S0888-7543(18)30475-0. doi: 10.1016/j.ygeno.2018.10.012
  16. Levin B.A., Rastorguev S.M., Simonov E., Boulygina E.S., Sharko F.S., Tsygankova S.V., Gabrielyan B.K., Roubenyan H.R., Mayden R.L., Nedoluzhko A.V.: High-throughput sequencing of the mitochondrial genomes from archived fish scales: an example of the extinct species flock of Sevan trout Salmo ischchan // Hydrobiologia. 2018. doi: 10.1007/s10750-018-3688-7
  17. Rastorguev S.M., Nedoluzhko A.V., Gruzdeva N.M., Boulygina E.S., Tsygankova S.V., Oshchepkov D.Y., Mazur A.M., Prokhortchouk E.B., Skryabin K.G.: Gene Expression in the Three-Spined Stickleback (Gasterosteus aculeatus) of Marine and Freshwater Ecotypes // Acta Naturae. 2018. V. 10(1). P. 66-74.
  18. Nedoluzhko A.V., Rastorguev S.M., Simonov E., Boulygina E.S., Sharko F.S., Tsygankova S.V., Nguyen V.Q. Gabrielyan B.K., Roubenyan H.R., Levin B.A.: Sequencing of two mitochondrial genomes of endangered form of the Sevan trout Salmo ischchan aestivalis // Mitochondrial DNA Part B. V. 3(2). P. 469-471. https://doi.org/10.1080/23802359.2018.1462120
  19. Nedoluzhko A.V., Rastorguev S.M., Simonov E., Boulygina E.S., Sharko F.S., Tsygankova S.V., Gabrielyan B.K., Roubenyan H.R., Levin B.A.: Two complete mitochondrial genomes of extinct form of the Sevan trout Salmo ischchan danilewskii // Mitochondrial DNA Part B. 2018. V. 3 (1)  https://doi.org/10.1080/23802359.2017.1419096.
  20. Sorokin M., Kholodenko R., Grekhova A., Suntsova M., Pustovalova M., Vorobyeva N., Kholodenko I., Malakhova G., Garazha A., Nedoluzhko A., Vasilov R., Poddubskaya E., Kovalchuk O., Adamyan L., Prassolov V., Allina D., Kuzmin D., Ignatev K., Osipov A., Buzdin A.: Acquired resistance to tyrosine kinase inhibitors may be linked with the decreased sensitivity to X-ray irradiation. Oncotarget. 2017. V. 9:5111-5124. https://doi.org/10.18632/oncotarget.23700
  21. Rastorguev S., Nedoluzhko A., Gruzdeva N., Boulygina E., Sharko F., Ibragimova A., Tsygankova S., Artemov A., Skryabin K., Prokhortchouk E.: Differential miRNA expression in the three-spined stickleback, response to environmental changes // Scientific Reports. 2017. V. 7(1):18089. doi: 10.1038/s41598-017-18128-w.
  22. I.A. Dolina, O.I. Efimova, E.M. Kildyushov, A.S. Sokolov, P.E. Khaitovich, A.V. Nedoluzhko, F.S. Sharko, B.M. Velichkovsky: Lateralization of gene expression at the frontal pole of the human brain // Psychology in Russia: State of the Art. 2017. V. 10 (3). p. 231-247.
  23. Чувакова Л.Н., Шарко Ф.С., Недолужко А.В., Полилов А.А., Прохорчук Е.Б., Скрябин К.Г., Евгеньев М.Б.: Характеристика генов hsp70 паразитического наездника Megaphragma amalphitanum (Hymenoptera: Trichogrammatidae) // Молекулярная биология. 2017. Т. 51(4). С. 615-621. doi: 10.7868/S0026898417040097.
  24. А.В. Недолужко, В.В. Кадников, А.В. Белецкий, Ф.С. Шарко, С.В. Цыганкова, А.В. Марданов, Н.В. Равин, К.Г. Скрябин: Микроорганизмы, ассоциированные с микронасекомыми Megaphragma amalphitanum и Scydosella musawasensis // Микробиология. 2017. Т. 86 (4). С. 520-522. doi: 10.7868/S0026365617040097
  25. Artemov A.V., Mugue N.S., Rastorguev S.M., Zhenilo S., Mazur A.M., S.V. Tsygankova, Boulygina E.S., Kaplun D., Nedoluzhko A.V. , Medvedeva Y.A., Prokhortchouk E.B.: Genome-wide DNA methylation profiling reveals epigenetic adaptation of stickleback to marine and freshwater conditions //Molecular Biology and Evolution.  2017. V. 34(9). p. 2203-2213. doi: 10.1093/molbev/msx156
  26. Ф.С. Шарко, А.В. Недолужко, С.М. Расторгуев, С.В. Цыганкова, Е.С. Булыгина, А.А. Полилов, Е.Б. Прохорчук, К.Г. Скрябин.: Порядок митохондриальных генов как дополнительный маркер в филогенетических исследованиях насекомых. Вавиловский журнал генетики и селекции. 2017. 21(3):368-373.
  27. Прохорчук Е.Б., Недолужко А.В., Шарко Ф.С., Цыганкова С.В., Булыгина Е.С., Расторгуев С.М., Соколов А.С., Мазур А.М., Полилов А.А., Скрябин К.Г.: Секвенирование генома и транскриптома миниатюрного перепончатокрылого Megaphragma amalphitanum (Hymenoptera: Trichocrammatidae). Вестник Московского университета. Серия 16: Биология. 2017. Т. 72. № 1. С. 35-38.
  28. Nedoluzhko A.V., Sharko F.S., Tsygankova S.V., Boulygina E.S., Sokolov A.S., Rastorguev S.M., Kadnikov V.V., Mardanov A.V., Ravin N.V., Mazur A.M., Polilov A.A., Gruzdeva N.M., Prokhortchouk E.B., Skryabin K.G.: Metagenomic analysis of microbial community of a parasitoid wasp Megaphragma amalphitanum. Genom Data. 2016 Dec 21;11:87-88.
  29. Аулов В.А., Климентов А.А., Машинистов Р.Ю., Недолужко А.В., Новиков А.М., Пойда А.А., Тертычный И.С., Теслюк А.Б., Шарко Ф.С.: Интеграция гетерогенных вычислительных инфраструктур для анализа данных геномного секвенирования. Математическая биология и биоинформатика. 2016. Т. 11. № 2. С. 205–213
  30. O.A. Shulga, A.V. Nedoluzhko, A.V. Shchennikova, N.M. Gruzdeva, A.A. Shelenkov, F.S. Sharko, A.S. Sokolov, E.S. Pantiukh, S.M. Rastorguev, E.B. Prokhortchouk, K. G. Skryabin: Profiling of microRNAs in wild type and early flowering transgenic Chrysanthemum morifolium by deep sequencing. Plant Cell, Tissue and Organ Culture (PCTOC). 2016. doi:10.1007/s11240-016-1109-z
  31. Sokolov A.S., Nedoluzhko A.V., Boulygina E.S., Tsygankova S.V., Gruzdeva N.M., Shishlov A.V.,  Kolpakova A., Rezepkin A.D., Skryabin K.G., Prokhortchouk E.B.: Six complete mitochondrial genomes from Early Bronze Age humans in the North Caucasus. Journal of Archaeological Sciences. 2016. V.73. P. 138–144
  32. Rastorguev Sergey, Nedoluzhko Artem, Sharko Fedor, Boulygina Eugenia; Sokolov Alexey; Gruzdeva Natalia; Skryabin Konstantin; Prokhortchouk Egor: Identification of novel microRNA genes in freshwater and marine forms of the three-spined stickleback (Gasterosteus aculeatus). Molecular Ecology Resources. 2016 May 30. doi: 10.1111/1755-0998.12545.
  33. Artem V. Nedoluzhko, Fedor S. Sharko, Eugenia S. Boulygina, Svetlana V. Tsygankova, Alexey S. Sokolov, Alexander M. Mazur, Alexey A. Polilov, Egor B. Prokhortchouk, Konstantin G. Skryabin: The complete mitochondrial genome of the smallest known free-living insect Scydosella musawasensis. Mitochondrial DNA Part B. V. 1(1). 2016. DOI:10.1080/23802359.2016.1149785
  34. S.M. Rastorguev, A.V. Nedoluzhko, M.A. Levina, E.B. Prokhortchouk, B.A. Levin. Pleiotropic Effect of Thyroid Hormones on Gene Expression in Fish as Exemplified by the Blue Bream Ballerus ballerus (Cyprinidae): Results of Transcriptomic Analysis. Doklady Biochemistry and Biophysics. 2016. V.467. p. 124-127.
  35. Fedor S. Sharko, Anna A. Shapovalova, Svetlana V. Tsygankova, Anastasia V. Komova, Eugenia S. Boulygina, Anton B. Teslyuk, Pavel M. Gotovtsev, Zorigto B. Namsaraev, Tatiana V. Khijniak, Artem V. Nedoluzhko, Raif G. Vasilov: Draft Genome Sequence of “ Halomonas chromatireducens ” Strain AGD 8-3, a Haloalkaliphilic Chromate- and Selenite-Reducing Gammaproteobacterium. Genome Announcements 04/2016; 4(2):e00160-16. DOI:10.1128/genomeA.00160-16
  36. Artem V. Nedoluzhko, Eugenia S. Boulygina, Alexey A. Polilov, Fedor S. Sharko, Alexander M. Mazur, Svetlana V. Tsygankova, Alexey S. Sokolov, Egor B. Prokhortchouk, Konstantin G. Skryabin: Mitochondrial genome of Megaphragma amalphitanum (Hymenoptera: Trichogrammatidae). Mitochondrial DNA 11/2015; DOI:10.3109/19401736.2015.1101546
  37. Pablo Librado, Clio Der Sarkissian, Luca Ermini, Mikkel Schubert, Hákon Jónsson, Anders Albrechtsen, Matteo Fumagalli, Melinda A. Yang, Cristina Gamba, Andaine Seguin-Orlando, Cecilie D. Mortensen, Bent Petersen, Cindi A. Hoover, Belen Lorente-Galdos, Artem Nedoluzhko, Eugenia Boulygina, Svetlana Tsygankova, Markus Neuditschko, Vidhya Jagannathan, Catherine Thèves, Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al-Rasheid, Thomas Sicheritz-Ponten, Ruslan Popov, Semyon Grigoriev, Anatoly N. Alekseev, Edward M. Rubin, Molly McCue, Stefan Rieder, Tosso Leeb, Alexei Tikhonov, Eric Crubézy, Montgomery Slatkin, Tomas Marques-Bonet, Rasmus Nielsen, Eske Willerslev, Juha Kantanen, Egor Prokhortchouk, Ludovic Orlando: Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of the National Academy of Sciences 11/2015; DOI:10.1073/pnas.1513696112
  38. Andaine Seguin-Orlando, Cristina Gamba, Clio Der Sarkissian, Luca Ermini, Guillaume Louvel, Eugenia Boulygina, Alexey Sokolov, Artem Nedoluzhko, Eline D. Lorenzen, Patricio Lopez, H. Gregory McDonald, Eric Scott, Alexei Tikhonov, Thomas W. Stafford, Jr, Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al-Rasheid, Beth Shapiro, Eske Willerslev, Egor Prokhortchouk, Ludovic Orlando: Pros and cons of methylation-based enrichment methods for ancient DNA. Scientific Reports 06/2015; 11826:11826. DOI:10.1038/srep11826
  39. Ghislaine Scelo, Yasser Riazalhosseini, Liliana Greger, Louis Letourneau, Mar Gonzàlez-Porta, Magdalena B Wozniak, Mathieu Bourgey, Patricia Harnden, Lars Egevad, Sharon M Jackson, Mehran Karimzadeh, Madeleine Arseneault, Pierre Lepage, Alexandre How-Kit, Antoine Daunay, Victor Renault, Hélène Blanché, Emmanuel Tubacher, Jeremy Sehmoun, Juris Viksna, Edgars Celms, Martins Opmanis, Andris Zarins, Naveen S Vasudev, Morag Seywright, Behnoush Abedi-Ardekani, Christine Carreira, Peter J Selby, Jon J Cartledge, Graham Byrnes, Jiri Zavadil, Jing Su, Ivana Holcatova, Antonin Brisuda, David Zaridze, Anush Moukeria, Lenka Foretova, Marie Navratilova, Dana Mates, Viorel Jinga, Artem Artemov, Artem Nedoluzhko, Alexander Mazur, Sergey Rastorguev, Eugenia Boulygina, Simon Heath, Marta Gut, Marie-Therese Bihoreau, Doris Lechner, Mario Foglio, Ivo G Gut, Konstantin Skryabin, Egor Prokhortchouk, Anne Cambon-Thomsen, Johan Rung, Guillaume Bourque, Paul Brennan, Jörg Tost, Rosamonde E Banks, Alvis Brazma, G Mark Lathrop: Variation in genomic landscape of clear cell renal cell carcinoma across Europe. Nature Communications 10/2014; 5:5135. DOI:10.1038/ncomms6135
  40. A V Nedoluzhko, E S Boulygina, A S Sokolov, S V Tsygankova, N M Gruzdeva, A D Rezepkin, E B Prokhortchouk: Analysis of the Mitochondrial Genome of a Novosvobodnaya Culture Representative using Next-Generation Sequencing and Its Relation to the Funnel Beaker Culture. Acta Naturae 08/2014; 6(2(21)):31-35.
  41. Artem V Artemov, Eugenia S Boulygina, Svetlana V Tsygankova, Artem V Nedoluzhko, Nikolay N Chekanov, Natalia M Gruzdeva, Natalia D Selezneva, Irina F Roshchina, Svetlana I Gavrilova, Boris B Velichkovsky, Konstantin G Skryabin, Egor B Prokhortchouk: Study of Alzheimer family case reveals hemochromotosis- associated HFE mutation. 07/2014; 1. DOI:10.1038/hgv.2014.4
  42. Sergey M Rastorguev, Artem V Nedoluzhko, Alexander M Mazur, Natalia M Gruzdeva, Alexander A Volkov, Anna E Barmintseva, Nikolai S Mugue, Egor B Prokhortchouk: High-throughput SNP-genotyping analysis of the relationships among Ponto-Caspian sturgeon species. Ecology and Evolution 08/2013; 3(8):2612-8. DOI:10.1002/ece3.659
  43. A.V. Mardanov, M M Babykin, A.V. Beletsky, A.I. Grigoriev, V V Zinchenko, V V Kadnikov, M P Kirpichnikov, A M Mazur, A.V. Nedoluzhko, N D Novikova, E B Prokhortchouk, N V Ravin, K G Skryabin, S V Shestakov: Metagenomic Analysis of the Dynamic Changes in the Gut Microbiome of the Participants of the MARS-500 Experiment, Simulating Long Term Space Flight. Acta Naturae 03/2013; 5(3):116-125.
  44. A V Mardanov, E S Bulygina, A V Nedoluzhko, V V Kadnikov, A V Beletskii, S V Tsygankova, A N Tikhonov, N V Ravin, E B Prokhorchuk, K G Skryabin: Molecular analysis of the intestinal microbiome composition of mammoth and woolly rhinoceros. Doklady Biochemistry and Biophysics 07/2012; 445(1):203-6. DOI:10.1134/S1607672912040060
  45. A. V. Tikhonov, A. V. Nedoluzhko, V. V. Martynov, D. B. Dorokhov: Study of genetic diversity and spatial structure of the wild soybean (Glycine soja Sieb. & Zucc.) population from the neighborhood of the settlement of Ekaterinovka in the south of Primorskii krai. Russian Journal of Genetics 03/2011; 44(3-3). DOI:10.1134/S1022795411020177
  46. K. G. Skryabin, E.B. Prokhortchouk, A.M. Mazur, E.S. Boulygina, S.V. Tsygankova, A.V. Nedoluzhko, S.M. Rastorguev, V.B. Matveev, N.N. Chekanov, Goranskaya D.A., A.B. Teslyuk, N.M. Gruzdeva, V.E. Velikhov, D.G. Zaridze, M.V. Kovalchuk: Combining Two Technologies for Full Genome Sequencing of Human. Acta Naturae 10/2009; 1(3):102-7.
  47. A. V. Nedoluzhko, A. V. Tikhonov, D. B. Dorokhov: Molecular genetic analysis of wild soybean (Glycine soja Sieb. & Zucc.) population structure in anthropogenic and natural landscapes of Primorskii krai. Russian Journal of Genetics 08/2008; 44(8-8):944-947. DOI:10.1134/S1022795408080085
  48. A. V. Nedoluzhko, D. B. Dorokhov: Study of the biosafety of genetically modified soybean in the center of its origin and diversity in the Far East of the Russian Federation. Cytology and Genetics 05/2007; 41(3):190-198. DOI:10.3103/S0095452707030097