Artem N.

молекулярный биолог, менеджер проектов, биоинформатик

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Последнее обновление резюме 16.04.2019
Адрес Bodø, Norway
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Опыт

Nord University
PostDoc
Ноя 2018 - Текущий
Kurchatov Institute
Head Of Laboratory
Июн 2015 - Ноя 2018
Kurchatov Institute
Deputy Head Of Laboratory
Мар 2015 - Июн 2015
Kurchatov Institute
PostDoc
Май 2009 - Мар 2015
Russian Academy of Sciences, Centre for Bioengineering RAS
PhD Student
Июл 2005 - Дек 2008

В чем вы сильны?

PCR, Next-generation sequencing, RNA-seq, microRNA-seq, ancient DNA, statistics, population genetics, genomics, bioinformatics (RNA-seq analysis, genome de novo assembly), sampling, aquaculture

Расскажите о себе что-нибудь еще: публикации, конференции, хобби

  1. Sharko F.S., Boulygina E.S., Rastorguev S.M., Tsygankova S.V., Tomkovich P.S., Nedoluzhko A.V.: Phylogenetic position of the presumably extinct slender-billed curlew, Numenius tenuirostris // Mitochondrial DNA Part A. 2019. DOI: 10.1080/24701394.2019.1597862

  2. Sharko F.S., Rastorguev S.M., Boulygina E.S., Tsygankova S.V., Ibragimova A.S., Tikhonov A.N., Nedoluzhko A.V.Molecular phylogeny of the extinct Steller's sea cow and other Sirenia species based on their complete mitochondrial genomes // Genomics. 2018. pii: S0888-7543(18)30475-0. doi: 10.1016/j.ygeno.2018.10.012

  3. Levin B.A., Rastorguev S.M., Simonov E., Boulygina E.S., Sharko F.S., Tsygankova S.V., Gabrielyan B.K., Roubenyan H.R., Mayden R.L., Nedoluzhko A.V.: High-throughput sequencing of the mitochondrial genomes from archived fish scales: an example of the extinct species flock of Sevan trout Salmo ischchan // Hydrobiologia. 2018. doi: 10.1007/s10750-018-3688-7
  4. Rastorguev S.M., Nedoluzhko A.V., Gruzdeva N.M., Boulygina E.S., Tsygankova S.V., Oshchepkov D.Y., Mazur A.M., Prokhortchouk E.B., Skryabin K.G.: Gene Expression in the Three-Spined Stickleback (Gasterosteus aculeatus) of Marine and Freshwater Ecotypes // Acta Naturae. 2018. V. 10(1). P. 66-74.
  5. Nedoluzhko A.V., Rastorguev S.M., Simonov E., Boulygina E.S., Sharko F.S., Tsygankova S.V., Nguyen V.Q. Gabrielyan B.K., Roubenyan H.R., Levin B.A.: Sequencing of two mitochondrial genomes of endangered form of the Sevan trout Salmo ischchan aestivalis // Mitochondrial DNA Part B. V. 3(2). P. 469-471. https://doi.org/10.1080/23802359.2018.1462120
  6. Nedoluzhko A.V., Rastorguev S.M., Simonov E., Boulygina E.S., Sharko F.S., Tsygankova S.V., Gabrielyan B.K., Roubenyan H.R., Levin B.A.: Two complete mitochondrial genomes of extinct form of the Sevan trout Salmo ischchan danilewskii // Mitochondrial DNA Part B. 2018. V. 3 (1)  https://doi.org/10.1080/23802359.2017.1419096.
  7. Sorokin M., Kholodenko R., Grekhova A., Suntsova M., Pustovalova M., Vorobyeva N., Kholodenko I., Malakhova G., Garazha A., Nedoluzhko A., Vasilov R., Poddubskaya E., Kovalchuk O., Adamyan L., Prassolov V., Allina D., Kuzmin D., Ignatev K., Osipov A., Buzdin A.: Acquired resistance to tyrosine kinase inhibitors may be linked with the decreased sensitivity to X-ray irradiation. Oncotarget. 2017. V. 9:5111-5124. https://doi.org/10.18632/oncotarget.23700
  8. Rastorguev S., Nedoluzhko A., Gruzdeva N., Boulygina E., Sharko F., Ibragimova A., Tsygankova S., Artemov A., Skryabin K., Prokhortchouk E.: Differential miRNA expression in the three-spined stickleback, response to environmental changes // Scientific Reports. 2017. V. 7(1):18089. doi: 10.1038/s41598-017-18128-w.
  9. I.A. Dolina, O.I. Efimova, E.M. Kildyushov, A.S. Sokolov, P.E. Khaitovich, A.V. Nedoluzhko, F.S. Sharko, B.M. Velichkovsky: Lateralization of gene expression at the frontal pole of the human brain // Psychology in Russia: State of the Art. 2017. V. 10 (3). p. 231-247. 
  10. Чувакова Л.Н., Шарко Ф.С., Недолужко А.В., Полилов А.А., Прохорчук Е.Б., Скрябин К.Г., Евгеньев М.Б.: Характеристика генов hsp70 паразитического наездника Megaphragma amalphitanum (Hymenoptera: Trichogrammatidae) // Молекулярная биология. 2017. Т. 51(4). С. 615-621. doi: 10.7868/S0026898417040097.
  11. А.В. Недолужко, В.В. Кадников, А.В. Белецкий, Ф.С. Шарко, С.В. Цыганкова, А.В. Марданов, Н.В. Равин, К.Г. Скрябин: Микроорганизмы, ассоциированные с микронасекомыми Megaphragma amalphitanum и Scydosella musawasensis // Микробиология. 2017. Т. 86 (4). С. 520-522. doi: 10.7868/S0026365617040097
  12. Artemov A.V., Mugue N.S., Rastorguev S.M., Zhenilo S., Mazur A.M., S.V. Tsygankova, Boulygina E.S., Kaplun D., Nedoluzhko A.V. , Medvedeva Y.A., Prokhortchouk E.B.: Genome-wide DNA methylation profiling reveals epigenetic adaptation of stickleback to marine and freshwater conditions //Molecular Biology and Evolution.  2017. V. 34(9). p. 2203-2213. doi: 10.1093/molbev/msx156
  13. Ф.С. Шарко, А.В. Недолужко, С.М. Расторгуев, С.В. Цыганкова, Е.С. Булыгина, А.А. Полилов, Е.Б. Прохорчук, К.Г. Скрябин.: Порядок митохондриальных генов как дополнительный маркер в филогенетических исследованиях насекомых. Вавиловский журнал генетики и селекции. 2017. 21(3):368-373.
  14. Прохорчук Е.Б., Недолужко А.В., Шарко Ф.С., Цыганкова С.В., Булыгина Е.С., Расторгуев С.М., Соколов А.С., Мазур А.М., Полилов А.А., Скрябин К.Г.: Секвенирование генома и транскриптома миниатюрного перепончатокрылого Megaphragma amalphitanum (Hymenoptera: Trichocrammatidae). Вестник Московского университета. Серия 16: Биология. 2017. Т. 72. № 1. С. 35-38.
  15. Nedoluzhko A.V., Sharko F.S., Tsygankova S.V., Boulygina E.S., Sokolov A.S., Rastorguev S.M., Kadnikov V.V., Mardanov A.V., Ravin N.V., Mazur A.M., Polilov A.A., Gruzdeva N.M., Prokhortchouk E.B., Skryabin K.G.: Metagenomic analysis of microbial community of a parasitoid wasp Megaphragma amalphitanum. Genom Data. 2016 Dec 21;11:87-88.
  16. Аулов В.А., Климентов А.А., Машинистов Р.Ю., Недолужко А.В., Новиков А.М., Пойда А.А., Тертычный И.С., Теслюк А.Б., Шарко Ф.С.: Интеграция гетерогенных вычислительных инфраструктур для анализа данных геномного секвенирования. Математическая биология и биоинформатика. 2016. Т. 11. № 2. С. 205–213
  17. O.A. Shulga, A.V. Nedoluzhko, A.V. Shchennikova, N.M. Gruzdeva, A.A. Shelenkov, F.S. Sharko, A.S. Sokolov, E.S. Pantiukh, S.M. Rastorguev, E.B. Prokhortchouk, K. G. Skryabin: Profiling of microRNAs in wild type and early flowering transgenic Chrysanthemum morifolium by deep sequencing. Plant Cell, Tissue and Organ Culture (PCTOC). 2016. doi:10.1007/s11240-016-1109-z
  18. Sokolov A.S., Nedoluzhko A.V., Boulygina E.S., Tsygankova S.V., Gruzdeva N.M., Shishlov A.V.,  Kolpakova A., Rezepkin A.D., Skryabin K.G., Prokhortchouk E.B.: Six complete mitochondrial genomes from Early Bronze Age humans in the North Caucasus. Journal of Archaeological Sciences. 2016. V.73. P. 138–144
  19. Rastorguev Sergey, Nedoluzhko Artem, Sharko Fedor, Boulygina Eugenia; Sokolov Alexey; Gruzdeva Natalia; Skryabin Konstantin; Prokhortchouk Egor: Identification of novel microRNA genes in freshwater and marine forms of the three-spined stickleback (Gasterosteus aculeatus). Molecular Ecology Resources. 2016 May 30. doi: 10.1111/1755-0998.12545.
  20. Artem V. Nedoluzhko, Fedor S. Sharko, Eugenia S. Boulygina, Svetlana V. Tsygankova, Alexey S. Sokolov, Alexander M. Mazur, Alexey A. Polilov, Egor B. Prokhortchouk, Konstantin G. Skryabin: The complete mitochondrial genome of the smallest known free-living insect Scydosella musawasensis. Mitochondrial DNA Part B. V. 1(1). 2016. DOI:10.1080/23802359.2016.1149785
  21. S.M. Rastorguev, A.V. Nedoluzhko, M.A. Levina, E.B. Prokhortchouk, B.A. Levin. Pleiotropic Effect of Thyroid Hormones on Gene Expression in Fish as Exemplified by the Blue Bream Ballerus ballerus (Cyprinidae): Results of Transcriptomic Analysis. Doklady Biochemistry and Biophysics. 2016. V.467. p. 124-127.
  22. Fedor S. Sharko, Anna A. Shapovalova, Svetlana V. Tsygankova, Anastasia V. Komova, Eugenia S. Boulygina, Anton B. Teslyuk, Pavel M. Gotovtsev, Zorigto B. Namsaraev, Tatiana V. Khijniak, Artem V. Nedoluzhko, Raif G. Vasilov: Draft Genome Sequence of “ Halomonas chromatireducens ” Strain AGD 8-3, a Haloalkaliphilic Chromate- and Selenite-Reducing Gammaproteobacterium. Genome Announcements 04/2016; 4(2):e00160-16. DOI:10.1128/genomeA.00160-16
  23. Artem V. Nedoluzhko, Eugenia S. Boulygina, Alexey A. Polilov, Fedor S. Sharko, Alexander M. Mazur, Svetlana V. Tsygankova, Alexey S. Sokolov, Egor B. Prokhortchouk, Konstantin G. Skryabin: Mitochondrial genome of Megaphragma amalphitanum (Hymenoptera: Trichogrammatidae). Mitochondrial DNA 11/2015; DOI:10.3109/19401736.2015.1101546
  24. Pablo Librado, Clio Der Sarkissian, Luca Ermini, Mikkel Schubert, Hákon Jónsson, Anders Albrechtsen, Matteo Fumagalli, Melinda A. Yang, Cristina Gamba, Andaine Seguin-Orlando, Cecilie D. Mortensen, Bent Petersen, Cindi A. Hoover, Belen Lorente-Galdos, Artem Nedoluzhko, Eugenia Boulygina, Svetlana Tsygankova, Markus Neuditschko, Vidhya Jagannathan, Catherine Thèves, Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al-Rasheid, Thomas Sicheritz-Ponten, Ruslan Popov, Semyon Grigoriev, Anatoly N. Alekseev, Edward M. Rubin, Molly McCue, Stefan Rieder, Tosso Leeb, Alexei Tikhonov, Eric Crubézy, Montgomery Slatkin, Tomas Marques-Bonet, Rasmus Nielsen, Eske Willerslev, Juha Kantanen, Egor Prokhortchouk, Ludovic Orlando: Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of the National Academy of Sciences 11/2015; DOI:10.1073/pnas.1513696112
  25. Andaine Seguin-Orlando, Cristina Gamba, Clio Der Sarkissian, Luca Ermini, Guillaume Louvel, Eugenia Boulygina, Alexey Sokolov, Artem Nedoluzhko, Eline D. Lorenzen, Patricio Lopez, H. Gregory McDonald, Eric Scott, Alexei Tikhonov, Thomas W. Stafford, Jr, Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al-Rasheid, Beth Shapiro, Eske Willerslev, Egor Prokhortchouk, Ludovic Orlando: Pros and cons of methylation-based enrichment methods for ancient DNA. Scientific Reports 06/2015; 11826:11826. DOI:10.1038/srep11826
  26. Ghislaine Scelo, Yasser Riazalhosseini, Liliana Greger, Louis Letourneau, Mar Gonzàlez-Porta, Magdalena B Wozniak, Mathieu Bourgey, Patricia Harnden, Lars Egevad, Sharon M Jackson, Mehran Karimzadeh, Madeleine Arseneault, Pierre Lepage, Alexandre How-Kit, Antoine Daunay, Victor Renault, Hélène Blanché, Emmanuel Tubacher, Jeremy Sehmoun, Juris Viksna, Edgars Celms, Martins Opmanis, Andris Zarins, Naveen S Vasudev, Morag Seywright, Behnoush Abedi-Ardekani, Christine Carreira, Peter J Selby, Jon J Cartledge, Graham Byrnes, Jiri Zavadil, Jing Su, Ivana Holcatova, Antonin Brisuda, David Zaridze, Anush Moukeria, Lenka Foretova, Marie Navratilova, Dana Mates, Viorel Jinga, Artem Artemov, Artem Nedoluzhko, Alexander Mazur, Sergey Rastorguev, Eugenia Boulygina, Simon Heath, Marta Gut, Marie-Therese Bihoreau, Doris Lechner, Mario Foglio, Ivo G Gut, Konstantin Skryabin, Egor Prokhortchouk, Anne Cambon-Thomsen, Johan Rung, Guillaume Bourque, Paul Brennan, Jörg Tost, Rosamonde E Banks, Alvis Brazma, G Mark Lathrop: Variation in genomic landscape of clear cell renal cell carcinoma across Europe. Nature Communications 10/2014; 5:5135. DOI:10.1038/ncomms6135
  27. A V Nedoluzhko, E S Boulygina, A S Sokolov, S V Tsygankova, N M Gruzdeva, A D Rezepkin, E B Prokhortchouk: Analysis of the Mitochondrial Genome of a Novosvobodnaya Culture Representative using Next-Generation Sequencing and Its Relation to the Funnel Beaker Culture. Acta Naturae 08/2014; 6(2(21)):31-35.
  28. Artem V Artemov, Eugenia S Boulygina, Svetlana V Tsygankova, Artem V Nedoluzhko, Nikolay N Chekanov, Natalia M Gruzdeva, Natalia D Selezneva, Irina F Roshchina, Svetlana I Gavrilova, Boris B Velichkovsky, Konstantin G Skryabin, Egor B Prokhortchouk: Study of Alzheimer family case reveals hemochromotosis- associated HFE mutation. 07/2014; 1. DOI:10.1038/hgv.2014.4
  29. Sergey M Rastorguev, Artem V Nedoluzhko, Alexander M Mazur, Natalia M Gruzdeva, Alexander A Volkov, Anna E Barmintseva, Nikolai S Mugue, Egor B Prokhortchouk: High-throughput SNP-genotyping analysis of the relationships among Ponto-Caspian sturgeon species. Ecology and Evolution 08/2013; 3(8):2612-8. DOI:10.1002/ece3.659
  30. A.V. Mardanov, M M Babykin, A.V. Beletsky, A.I. Grigoriev, V V Zinchenko, V V Kadnikov, M P Kirpichnikov, A M Mazur, A.V. Nedoluzhko, N D Novikova, E B Prokhortchouk, N V Ravin, K G Skryabin, S V Shestakov: Metagenomic Analysis of the Dynamic Changes in the Gut Microbiome of the Participants of the MARS-500 Experiment, Simulating Long Term Space Flight. Acta Naturae 03/2013; 5(3):116-125.
  31. A V Mardanov, E S Bulygina, A V Nedoluzhko, V V Kadnikov, A V Beletskii, S V Tsygankova, A N Tikhonov, N V Ravin, E B Prokhorchuk, K G Skryabin: Molecular analysis of the intestinal microbiome composition of mammoth and woolly rhinoceros. Doklady Biochemistry and Biophysics 07/2012; 445(1):203-6. DOI:10.1134/S1607672912040060
  32. A. V. Tikhonov, A. V. Nedoluzhko, V. V. Martynov, D. B. Dorokhov: Study of genetic diversity and spatial structure of the wild soybean (Glycine soja Sieb. & Zucc.) population from the neighborhood of the settlement of Ekaterinovka in the south of Primorskii krai. Russian Journal of Genetics 03/2011; 44(3-3). DOI:10.1134/S1022795411020177
    K G Skryabin, E B Prokhortchouk, A M Mazur, E S Boulygina, S V Tsygankova, A.V. Nedoluzhko, S M Rastorguev, V B Matveev, N N Chekanov, Goranskaya D A, A.B. Teslyuk, N M Gruzdeva, V E Velikhov, D G Zaridze, M V Kovalchuk: Combining Two Technologies for Full Genome Sequencing of Human. Acta Naturae 10/2009; 1(3):102-7.
  33. A. V. Nedoluzhko, A. V. Tikhonov, D. B. Dorokhov: Molecular genetic analysis of wild soybean (Glycine soja Sieb. & Zucc.) population structure in anthropogenic and natural landscapes of Primorskii krai. Russian Journal of Genetics 08/2008; 44(8-8):944-947. DOI:10.1134/S1022795408080085
  34. A. V. Nedoluzhko, D. B. Dorokhov: Study of the biosafety of genetically modified soybean in the center of its origin and diversity in the Far East of the Russian Federation. Cytology and Genetics 05/2007; 41(3):190-198. DOI:10.3103/S0095452707030097