Основная научная деятельность заключалась в изучении метагеномике (объектом исследования была кишечная микрофлора человека), параллельно были отдельные задачи по аннотации бактериальных геномов, генетике человека. В процессе работы сталкивалась с различными аспектами анализа big data, как то кластерный анализ, алгоритмы машинного обучения. Сейчас развиваю эти навыки, прохожу дополнительное обучение по этому направлению. Имею значительный опыт статистического анализа и визуализации на языке R, также пишу на Perl, PL/SQL, bash, в меньшей степени - Python. В качестве хобби изучаю Swift.

Conferences

1. "Comparative analysis of metabolic profiles for human gut microbiota using ABI SOLiD sequencing", MCCMB-2011, Moscow, 2011
2. "MALINA – a web-service for metagenomic data analysis ", 54th scientific conference MPTI, Moscow, 2011 [In Russian]
3. "MALINA - a Web-service for human gut microbiota whole-genome metagenomic reads analysis.", IHMC, Paris, 2012
4. "Deep metagenomics and metaproteomics of human gut: dramas and delights.", BGRS\SB, Novosibirsk, 2012
5. "Challenges in bioinformatics analysis of whole-genome metagenomic sequences.", Postgenome, Kazan, 2012
6. "Special features of bioinformatic analysis of microbiome whole genome sequencing data", The first Russian scientific conference for young medical scientists, Moscow, 2012 [in Russian]
7. " Special features of gut microbiome of Russian population: functional analysis and cross-national", High Throughput Sequencing Conference, Novosibirsk, 2013 [In Russian]

Publications

1. Alexeev Dmitry, Kostrjukova Elena, Aliper Alexander, Popenko Anna et al.  Application of Spiroplasma melliferum proteogenomic profiling for discovery virulence factors and pathogenicity mechanisms of host associated bacteria. // Journal of Proteome Research. 2012. V. 11. P. 224-236.
2. A. Tyacht, A. Popenko MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. // Source Code for Biology and Medicine. 2012. V. 7. eP. 13.
3. Nadezhda F. Polina, Polina, Marina M. Shkarupeta, Anna S. Popenko, Alexander A. Vassilevski, Sergey, A. Kozlov, Eugene V. Grishin, et al. Cyto-insectotoxin 1a from  Lachesana tarabaevi spider venom inhibits Chlamydia trachomatis infection. // Probiotics & Antimicro. Prot. 2012. V. 4. P. 208–216.
4. D.G. Alexeev, E.S. Kostrjukova, A.S. Popenko, I.V. Rusalvskiy, A.V. Tyakht Potential possibilities of use of distributed computational systems for solving conceptual problems of building informational complexes for processing high throughput sequencing data and deep proteoming profiling. // Informatization and communication. 2012. V. 8. P. 10-14 [In Russian]
5. Tyakht AV, Kostryukova ES, Popenko AS, Belenikin MS, Pavlenko AV, Larin AK, Karpova IY, Selezneva OV, Semashko TA, Ospanova EA, Babenko VV, Maev IV, Cheremushkin SV, Kucheryavyy YA, Shcherbakov PL, Grinevich VB, Efimov OI, Sas EI, Abdulkhakov RA, Abdulkhakov SR, Lyalyukova EA, Livzan MA, Vlassov VV, Sagdeev RZ,Tsukanov VV, Osipenko MF, Kozlova IV, Tkachev AV, Sergienko VI, Alexeev DG, Govorun VM. Human gut microbiota community structures in urban and rural populations in Russia. // Nat Commun. 2013. Vol. 4. eP. 2469.
6. Tyakht AV, Alexeev DG, Popenko AS, Govorun VM. Rural and urban microbiota: To be or not to be? // Gut Microbes. 2014. V. 5. eP3.
7. S.V. Fedosenko, L.M. Ogorodova, V.M. Govorun, V.M. Karnaushkina, I.V. Saltykova, E.S. Kostryukova, A.V. Tyakht, A.S. Popenko Taxonomic analysis of gut microbiome from patients with COPD. // Ural medical magazine. V. 6. P. 168 – 173. [In Russian]
8. L.M. Ogorodova, V.M. Govorun, S.V. Fedosenko, V.M. Karnaushkina, I.V. Saltykova, D.G. Alexeev, E.S. Kostryukova, A.V. Tyakht, A.S. Popenko Special features of gut microbiome of patients with COPD. // Bulletin of Siberian medicine. 2014. V. 13, № 5. P. 55–61 [In Russian]
9. Egshatyan L, Kashtanova D, Popenko A, Tkacheva O, Tyakht A, Alexeev D, Karamnova N, Kostryukova E, Babenko V, Vakhitova M, Boytsov S. Gut microbiota and diet in patients with different glucose tolerance. // Endocr Connect. 2016. V. 5 №1 P.1–9
10. Dubinkina VB, Tyakht AV, Ilina EN, Ischenko DS, Kovarsky BA, Yarygin KS, Pavlenko AV, Popenko AS, Alexeev DG, Taraskina AE, Nasyrova RF, Krupitski EM, Skorodumova LO, Larin AK, Kostryukova ES, Govorun VM. Metagenomic analysis of taxonomic and functional changes in gut microbiota of patients with alcoholic dependence syndrome. // Biomed Khim. 2015. V. 61 №6 P.742–749 [In Russian]