Vladislav S.

Bioinformatician
Последнее обновление резюме 26.11.2023
Адрес Saint-Petersburg, Russian Federation
Электронная почта Заблокировано
Соцсеть или сайт Заблокировано

Опыт

Laboratory of Mathematical Biology and Bioinformatics at SPbPU
Research engineer
Май 2022 - Текущий

Образование

Saint Petersburg State University
Bioinformatics
Сен 2023 - Текущий
Bioinformatics institute
Professional retraining "Bioinformatics for Biologists"
Сен 2022 - Май 2023
Peter the Great St.Petersburg Polytechnic University
Biotechnical systems and technologies
Сен 2019 - Июн 2023

В чем вы сильны?

During the job I am usually write small or big scripts on bash, Python and R programming languages and build data processing pipelines using Snakemake and Slurm scheduler on server. In my day-to-day work I use linux terminal to analyze big amount of data and covert it into usable formats. I have physics and biology background which helps me to solve bioinformatics problems. I create informative plots and present the results in an accessible manner.

I had work experience with:

  1. RNA-seq data analysis
  2. Bisulfite sequencing data analysis
  3. Differential expression analysis
  4. Differential methylation analysis 
  5. Phylogenetic analysis
  6. de novo (computionaly) transposons discovery in plant genome

Расскажите о себе что-нибудь еще: публикации, конференции, хобби

Conferences

  • "Transcriptional profiling of fusarium wilt in flax" - Abstract and poster, BGRS international conference, Novosibirsk, 2022
  • "Multi-omics profiling of flax in response to Fusarium wilt disease" - Abstract and oral presentation, PlantGen international conference, Kazan, 2023

Publications

  1. [Pre-print] Logachev A., Kanapin A., Rozhmina T., Stanin V., Mikhael Bankin M., Samsonova A., Osyagina E., Samsonova M. – Pangenomics of Flax Fungal Parasite Fusarium oxysporum f. sp. Lini // Article in International Journal of Molecular Sciences. 2023

  2. Stanin V.., Samsonova A., Kanapin A., Bankin M., Logachev A., Rozhmina T., Samsonova M. – Multi-omics profiling of flax in response to Fusarium wilt disease // Article in abstracts of the 7th International Scientific Conference Plant Genetics, Genomics, Bioinformatics, and Biotechnology (PlantGen2023). Kazan, 2023. – p. 388

  3. Stanin V., Bankin M., Logachev A., Rozhmina T., Samsonova A., Kanapin A, Samsonova M. – Transcriptional profiling of fusarium wilt in flax // Article in abstracts of Institute of The Tirteenth International Multiconference Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2022). Novosibirsk: ICG SB RAS, 2022. – pp. 642-643

Education

  • Total score of the Unified State Examination (ЕГЭ) in three subjects - 292 [particularly, in physics  - 100 (maximum)]
  • Bachelor's degree with honours

Additional Experience and Hobbies

  • European certificate of first aid course in the "Red Crescent" of St. Petersburg
  • I love electronic music and I am keen on mixing various songs together
  • I like video editing
  • Worked as a group leder in linguistic (English) kids' camp
  • Worked as a quest-room operator
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