Vladislav S.
BioinformaticianПоследнее обновление резюме | 26.11.2023 |
Адрес | Saint-Petersburg, Russian Federation |
Электронная почта | Заблокировано |
Соцсеть или сайт | Заблокировано |
Опыт
Research engineer
Образование
Bioinformatics
Professional retraining "Bioinformatics for Biologists"
Biotechnical systems and technologies
В чем вы сильны?
During the job I am usually write small or big scripts on bash, Python and R programming languages and build data processing pipelines using Snakemake and Slurm scheduler on server. In my day-to-day work I use linux terminal to analyze big amount of data and covert it into usable formats. I have physics and biology background which helps me to solve bioinformatics problems. I create informative plots and present the results in an accessible manner.
I had work experience with:
- RNA-seq data analysis
- Bisulfite sequencing data analysis
- Differential expression analysis
- Differential methylation analysis
- Phylogenetic analysis
- de novo (computionaly) transposons discovery in plant genome
Расскажите о себе что-нибудь еще: публикации, конференции, хобби
Conferences
- "Transcriptional profiling of fusarium wilt in flax" - Abstract and poster, BGRS international conference, Novosibirsk, 2022
- "Multi-omics profiling of flax in response to Fusarium wilt disease" - Abstract and oral presentation, PlantGen international conference, Kazan, 2023
Publications
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[Pre-print] Logachev A., Kanapin A., Rozhmina T., Stanin V., Mikhael Bankin M., Samsonova A., Osyagina E., Samsonova M. – Pangenomics of Flax Fungal Parasite Fusarium oxysporum f. sp. Lini // Article in International Journal of Molecular Sciences. 2023
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Stanin V.., Samsonova A., Kanapin A., Bankin M., Logachev A., Rozhmina T., Samsonova M. – Multi-omics profiling of flax in response to Fusarium wilt disease // Article in abstracts of the 7th International Scientific Conference Plant Genetics, Genomics, Bioinformatics, and Biotechnology (PlantGen2023). Kazan, 2023. – p. 388
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Stanin V., Bankin M., Logachev A., Rozhmina T., Samsonova A., Kanapin A, Samsonova M. – Transcriptional profiling of fusarium wilt in flax // Article in abstracts of Institute of The Tirteenth International Multiconference Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2022). Novosibirsk: ICG SB RAS, 2022. – pp. 642-643
Education
- Total score of the Unified State Examination (ЕГЭ) in three subjects - 292 [particularly, in physics - 100 (maximum)]
- Bachelor's degree with honours
Additional Experience and Hobbies
- European certificate of first aid course in the "Red Crescent" of St. Petersburg
- I love electronic music and I am keen on mixing various songs together
- I like video editing
- Worked as a group leder in linguistic (English) kids' camp
- Worked as a quest-room operator